Lujan,Ī validated software application to measure fiber organization in soft tissueīiomechanics and Modeling in Mechanobiology, December 2016.ĭiameterJ is a validated nanofiber diameter characterization tool. On the orientation analysis of digitized images In addition, we expect you to include adequateĬitations and acknowledgments whenever you present or publish results that are based on it. You are free to use this software for research purposes. Java Source (latest): available on GitHub.Run("OrientationJ Distribution", "tensor=1.0 gradient=4 radian=on histogram=on min-coherency=20.0 min-energy=10.0 ") Run("OrientationJ Distribution", "tensor=1.0 gradient=2 radian=on histogram=on min-coherency=20.0 min-energy=10.0 ") ![]() Run("OrientationJ Distribution", "tensor=1.0 gradient=1 radian=on histogram=on min-coherency=20.0 min-energy=10.0 ") Run("OrientationJ Distribution", "tensor=1.0 gradient=0 radian=on histogram=on min-coherency=20.0 min-energy=10.0 ") Run("Chirp Image Custom", "width=512 height=512") The results are displayed on the log window of ImageJ in tab-separated formatĮxample of macro: omparison of the isotropic properties of the gradient sigma: standard deviation of the Laplacian of Gaussian prefilter Run("OrientationJ Measure", "sigma=.0.0") Call the Measure plugin from a ImageJ macro color-survey: to display the color-coded HSB gradient: index of the used gradient (0: Cubic Spline, 1: Finite difference, 2: Fourier 3: Riesz, 4: Gaussian) tensor: value of the standard deviation of the Gaussian local window of the structure tensor Run("OrientationJ Analysis", "tensor=1.0 gradient=0 color-survey=on hue=Orientation sat=Coherency bri=Original-Image ") Call the Analysis plugin from a ImageJ macro The OrientationJ plugins are recordable on ImageJ.
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